Shan Rauf

Useful information for traveling to Japan

Date published: Sep 11, 2026

This post is a collection of information and tips that I would have found useful before my first Japan trip. A lot of this information isn't well captured in existing Japan travel content online, so the post should be helpful for others to avoid similar issues that I faced.

This video by Kensho Quest is a good start to be mostly functional with the train system.

Keeping track of what fares to pay and how

Lots of videos online cover the different kinds of trains (local, rapid, limited express) and fares (base/local fare, limited express fare), but the main point I want to highlight is: Be clear on which fares are required for the types of trains you're riding, and be clear on how you're paying them.

Most trains that you'll use in Tokyo are "local" trains. To ride these, you need to pay a "base/local fare". I believe the base fare price is generally a function of how many kilometers you're traveling. If you're riding a local train from Shibuya station to Omotesando station (Ginza line), you'd tap your IC card and only pay the base fare. In total, you'll tap your IC card twice on this trip (once to enter Shibuya station and once to exit Omotesando station).

Sometimes you'll only ride local trains but need to transfer between train lines, and sometimes these train lines are managed by completely different companies. For example, in the case of transferring between train lines both managed by the same company: If going from Shibuya to Tokyo on JR Yamanote, followed by Tokyo to Shinjuku on JR Chuo, then when you arrive at Tokyo station, you would follow the JR Chuo signs to get to that line; there won't be a ticket gate to tap your IC at to get to the Chuo line because you're already in the "paid area" of the same company (JR) running the line. You only tap your IC card twice in total on this trip.

JR train line badges

You can easily tell if two train lines are both run by JR because the train line symbols will be square-shaped

Another possibility is that you're transferring between train lines run by separate companies. For example, to get to Mount Takao for hiking, you might go from Kanda station to Shinjuku station (JR Chuo), followed by taking the Keio line to Kitano Station, followed by taking the Takao line to Takaosanguchi station. In this case, at Shinjuku station, you would look for the transfer gates to the Keio line and tap your IC card at those gates; that tap ends the JR trip and starts the Keio trip. Then you head to Kitano station, and then when you get off there you walk to the Takao line train; there's no ticket gate to tap at here because the Keio line and Takao line are managed by the same company. In total, you scan your IC card 3 times on this trip.

Another type of train you may take in Japan is a limited express train (特急). Along with the usual base fare, these trains also have a "limited express fare". For example, if you want to take the Keisei Skyliner from NRT airport Terminal 1 to Keisei-Ueno station, you need to pay for both the base fare (~¥1,280) and the limited express fare (¥1,300). You can buy tickets online or in-person, but in both cases I believe, you are given the option to either buy a combined ticket that includes both fares, OR you buy only a limited express ticket and then at the ticket gate you tap your IC card along with inserting your limited express ticket. I don't really understand why the option to do that exists when a singular, combined ticket would be simpler (I guess it gives people the option to pay the minimal amount while otherwise using their existing IC card balance?). In any case, the point is that you need to know if your ticket is a combined ticket that includes both fares or not, because that determines whether you also need to tap your IC card onto the gate.

The Shinkansen is another common example of a train type where you'll pay both a base fare and a limited express fare. If you buy your ticket on SmartEX (which I highly recommend unless you have a reason to purchase your ticket at the station), the ticket always includes both the base fare and the limited express fare. In other words, if you enter Tokyo station from the outside and go to the Shinkansen gates, you only have to scan the SmartEX QR code to go past the gates.

However, consider this example that actually happened during my trip: I wanted to go from Shinjuku-gyoenmae station to Tokyo station, and then take the Shinkansen to Kyoto station. To do this, I tapped my IC card in at Shinjuku-gyoenmae station (Marunouchi line), and then at Tokyo station, I tapped out of the Marunoichi line, and then I followed the signs for the JR/Shinkansen lines. I believe the signs took me to JR gates, and so I tapped my IC at the JR gates to enter the JR paid concourse area, and then I walked to the Shinkansen gates. Then at the Shinkansen gates, I believe I scanned my SmartEX QR code first, and then I scanned my IC card right after. It was important that I scanned my IC card here (even though I think the ticket gate already opened for me with just the QR code if I recall. Not sure) because I needed to close the "trip" I just started by scanning into the JR area. So by scanning my QR code, I handled the base fare plus limited express fare for the Shinkansen ride, and by scanning my IC card after, I concluded the "trip" (that isn't really a trip) that was started when tapping at the JR gates. If I didn't do this, I'd have a pending trip I believe and it'd probably cause problems the next time I tried using my IC card at a different station. As for why I didn't exit the Marunouchi line and then walk directly to the "direct" Shinkansen gates (as opposed to going through this JR transfer gate), it's because the recommended signed path in the station pointed me in this direction (presumably because it's faster and the extra IC tap at the Shinkansen gates isn't that complicated once you understand why it's necessary).

On the other hand, when I took the Shinkansen again from Shin-Osaka to Tokyo, I didn't have to scan my IC card as well because I was coming in from the direct Shinkansen gates (where I hadn't already scanned my IC card before to get there) and my QR code ticket was a combined ticket. Again, the main point is to be clear on what fares are required to enter/exit certain areas of a station and how exactly you're paying them (or not paying them in the case where I entered the JR concourse area only for that trip to be "closed" for ¥0 when tapping my IC card at the Shinkansen gate).

Station entrances/exits

Ideally, you enter/exit from the correct station exits that Google Maps specifies. Sometimes, the exits are labeled with a number, and sometimes with a name (and sometimes both). On Google Maps, usually both get shown, and so you can use both pieces of information and see which of them the station uses in their signs, and then from there you shouldn't have issues following the correct signs to your entrance/exit.

When trying to enter (or exit) a train station, if you can't find the exact entrance, it's usually fine to use a different entrance as long as it's for the same station (for example, if you can't find entrance C9 for Ueno station, you can always enter through C8 and you won't have any issues getting to your train). The worst case I experienced is having to spend a few extra minutes walking to the train platform that I needed to go to. For example, I was in Uji and entered the train station from the entrance closest to me instead of the entrance recommended by Google Maps, and because of this, once in the station, I remember having to go through some underpass (or overpass, I forgot) because we needed to board the train that travels in the opposite direction on the other side of the train platform, so we had to take this roundabout way to get to the other side of the tracks (when we would have already been on that side if we entered using the entrance that Google Maps suggested). I know in New York I've been in train stations where this sort of overpass/underpass didn't exist, and so it was important to use the correct entrance to be on the correct side of the platform, but I never saw this in Japan (maybe they exist though!).

I say "as long as it's the same station" because for example, entering the Keisei-Ueno station is not the same thing as entering the JR Ueno station (there are sometimes multiple stations in the same general area, and they are ran by different companies operating different train lines, so you want to make sure you enter the station that corresponds to the train line you want to get on).

Other tips

Tax-free shopping

Note: I don't think any of this information matters after November 1st, 2026 because the tax-free system will change then (you can learn more about that in this video)

As you may know, tax-free goods generally must be unopened until you reach the airport and fly out of the country. At least for NRT airport, after passing through security, there's an area where you'll see "kiosks" and signs saying to scan your passport if you did any tax-free shopping during your stay. After scanning your passport, you should see a confirmation screen, after which you can continue onward.

HERE is what is confusing: Japan’s National Tax Agency website tells travelers to "obtain customs confirmation before checking in your baggage with the airline company."

Customs tax-free declaration pamphlet

This is presumably because they wouldn't easily be able to audit the tax-free goods in your check-in luggage once already checked in. I think if they did ask to check your goods and you didn't have them (because of them being in your check-in bag), the worst case would be that they make you pay the consumption tax on those goods.

The problem though is that it's unclear where/how to get this "customs confirmation" at the airport! There's a little bit of writing online about this, but ultimately almost everyone disregards it (according to Reddit comments here as well as here, for example)! They check in their bags containing tax-free goods, pass through security, scan their passport at the tax-free shopping kiosks, and they continue with no problems. So that's what I did as well, and I had no issues, so you probably won't either...

Another point is that some videos I watched warned about "integrated kiosks" that you want to avoid because using them may mean you don't get the temporary visitor stamp in your passport that's needed for tax-free shopping. At NRT airport, I didn't even see integrated kiosks, and everyone had to go into the same line to speak with an immigration officer (who added the temporary visitor stamp into everyone's passport), so it seems impossible to go to the wrong place to get the stamp.

Restrooms

These places have restrooms that are free to enter

I remember most shrines and temples that I visited having restrooms (although the lines can get really long at the more popular locations). Also, in most cases, train stations will have a restroom, but it's usually past the ticket gate (so you need to already be planning to enter that station to use it). Some food and drink establishments also have restrooms that you can use if you purchase something.

Other general tips

Things I want to get clearer on before my next visit

Miscellaneous information related to my trip:

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